2012

G. P. Acuna, M. Bucher, I. Stein, C. Steinhauer, A. Kuzyk, P. Holzmeister, R. Schreiber, A. Moroz, F. D. Stefani,  T. Liedl, F. C. Simmel, and P. Tinnefeld, Distance dependence of single-fluorophore quenching by gold nanoparticles studied on DNA origami, ACS Nano, doi:10.1021/nn2050483 (2012).

A. Bessonov, J. Takemoto, F. C. Simmel, Probing DNA-lipid membrane interactions with a lipopeptide nanopore, ACS Nano, doi: 10.1021/nn3003696 (2012).

A. Kuzyk, R. Schreiber, Z. Fan, G. Pardatscher, E.-M. Roller, A. Högele, F. C. Simmel, A. O. Govorov, T. Liedl, DNA-based self-assembly of chiral plasmonic nanostructures with tailored optical response, Nature 483, 311-314 (2012). http://www.nature.com/nature/journal/v483/n7389/full/nature10889.html

M. Weitz, F. C. Simmel, Synthetic in vitro transcription circuits, Transcription 3, 87-91 (2012). http://www.landesbioscience.com/journals/transcription/article/19734/

F. C. Simmel, DNA-based assembly lines and nanofactories, Current Opinion in Biotechnology, doi:10.1016/j.copbio.2011.12.024 (2012).

S. Schink. S. Renner, K. Alim, V. Arnaut, F. C. Simmel, and U. Gerland, Quantitative Analysis of the Nanopore Translocation Dynamics of Simple Structured Polynucleotides, Biophysical Journal 102, 85-95 (2012).

R. Jungmann, M. Scheible, F. C. Simmel, Nanoscale imaging in DNA nanotechnology, WIREs Nanomedicine & Nanobiotechnology 4, 66-81 (2012).

2011

M. Langecker, D. Pedone, F. C. Simmel, U. Rant, Electrophoretic time-of-flight measurements of single DNA molecules with two stacked nanopores, Nano Letters 11, 5002-5007 (2011). http://dx.doi.org/10.1021/nl2030079

E. Franco, E. Friedrichs, J. Kim, R. Jungmann, R. Murray, E. Winfree, F. C. Simmel, Timing molecular production and motion with a synthetic transcriptional clock, Proc. Natl. Acad. Sci. U.S.A. 108, E784-E793 (2011). DOI: 10.1073/pnas.1100060108

A. Kuzyk, Dielectrophoresis at the nanoscale, Electrophoresis, 32, 2307, (2011). http://dx.doi.org/10.1002/elps.201100038

R. Jungmann,  M. Scheible, A. Kuzyk,  G. Pardatscher,  C. E. Castro, F. C. Simmel, DNA origami-based nanoribbons: assembly, length distribution, and twist, Nanotechnology, 22, 275301 (2011). http://iopscience.iop.org/0957-4484/22/27/275301

Y. Krishnan and F. C. Simmel, Nucleic acid based molecular devices, Angewandte Chemie Int. Ed. 50, 3124-3156 (2011). http://dx.doi.org/10.1002/anie.200907223

S. Renner, A. Bessonov, F. C. Simmel, Voltage-controlled insertion of single α-hemolysin and MspA nanopores into lipid
bilayer membranes, Appl. Phys. Lett. 98, 083701 (2011). http://dx.doi.org/10.1063/1.3558902

2010

S. Renner, A. Bessonov, U. Gerland, F. C. Simmel, Sequence-dependent unfolding kinetics of DNA hairpins studied by nanopore force spectroscopy, J. Phys. Cond. Mat. 22, 454119 (2010).

R. Jungmann, C. Steinhauer, M. Scheible, A. Kuzyk, P. Tinnefeld, F. C. Simmel, Single-Molecule Kinetics and Super-Resolution Microscopy by Fluorescence Imaging of Transient Binding on DNA Origami, Nano Letters 10, 4756-4761 (2010) http://dx.doi.org/10.1021/nl103427w

S. Modi, D. Bhatia, F. C. Simmel, and Y. Krishnan, Structural DNA Nanotechnology: From bases to bricks, from structure to function, Journal of Physical Chemistry Letters 1, 1994-2005 (2010). http://dx.doi.org/10.1021/jz1004957

V. Tejedor, O. Benichou, R. Voituriez, R. Jungmann, F. C. Simmel, C. Selhuber, L. Oddershede, and R. Metzler, Quantitative analysis of single particle trajectories, Biophysical Journal 98, 1364-1372 (2010).

S. Kaniber, M. Brandstetter, F. C. Simmel, I. Carmeli, A. Holleitner, On-Chip Functionalization of Carbon Nanotubes with Photosystem I, Journal of the American Chemical Society 132, 2872-2873 (2010).

S. Renner, S. Geltinger, F. C. Simmel, Nanopore Translocation and Force Spectroscopy Experiments in Microemulsion Droplets, Small, 6, 190-194 (2010). http://dx.doi.org/10.1002/smll.200901435

2009

C. Steinhauer, R. Jungmann, T. Sobey, F. C. Simmel, P. Tinnefeld, DNA Origami as a Nanoscopic Ruler for Super-Resolution Microscopy, Angewandte Chemie International Edition, 48, 8870-8873 (2009).  http://dx.doi.org/10.1002/anie.200903308

F. C. Simmel, Wiring-up ion channels (N&V article), Nature Physics, 5, 783-784 (2009). http://dx.doi.org/10.1038/nphys1434

F. C. Simmel, Processive Motion of Bipedal DNA Walkers, Chemphyschem, 10, 2593-2597 (2009). http://dx.doi.org/10.1002/cphc.200900493

S. Kaniber, F. C. Simmel, A. W. Holleitner, I. Carmeli, The optoelectronic properties of a photosystem I - carbon nanotube hybrid system, Nanotechnology, 20, art. no. 345701 (2009).

T. L. Sobey, S. Renner, F. C. Simmel, Assembly and melting of DNA nanotubes from single-sequence tiles, Journal of Physics Condensed Matter, 21, 034112 (2009). http://dx.doi.org/10.1088/0953-8984/21/3/034112

2008

R. Jungmann, T. Liedl, T. L. Sobey, W. Shih, and F. C. Simmel, Isothermal assembly of DNA origami structures using denaturing agents, Journal of the American Chemical Society,  130, 10062-10063 (2008). http://dx.doi.org/10.1021/ja8030196

F. C. Simmel, Three-dimensional nanoconstruction with DNA, Angewandte Chemie Int. Ed. 47, 5884-5887  (2008).

R. Jungmann, S. Renner,  F. C. Simmel, From DNA nanotechnology to synthetic biology, HFSP Journal 2, 99-109 (2008).

M. Olapinski, S. Manus, N. Fertig, F. C. Simmel, Probing whole cell currents in high-frequency fields: Identification of thermal effects, Biosensors and Bioelectronics 23, 872-878  (2008).

2007

F. C. Simmel, Towards biomedical applications for nucleic acid nanodevices, Nanomedicine 2, 817-830 (2007).

T. Liedl, H. Dietz, B. Yurke, and F. C. Simmel, Controlled trapping and release of quantum dots in a DNA-switchable hydrogel, Small 3, 1688-1693 (2007).

E. Friedrichs and F. C. Simmel, Controlling DNA polymerization with a switchable aptamer, Chembiochem 8, 1662-1666  (2007).

T. Liedl and F. C. Simmel, Determination of DNA Melting Temperatures in Diffusion-Generated Chemical Gradients, Analytical Chemistry 79, 5212-5216 (2007).

T. Liedl, T. L. Sobey, and F. C. Simmel, DNA-based nanodevices, Nano Today 2, 36-41 (2007).

A. Reuter, W. U. Dittmer, and F. C. Simmel, Kinetics of protein-release by an aptamer-based DNA nanodevice, Eur. Phys. J. E 22, 33-40 (2007).

2006

B. K. Müller, A. Reuter, F. C. Simmel and D. C. Lamb, Single-Pair FRET Characterization of DNA Tweezers, Nano Letters 6, 2814-2820 (2006).

T. Liedl, M. Olapinski, and F. C. Simmel, A surface-bound DNA switch driven by a chemical oscillator, Angewandte Chemie Int. Ed. 45, 5007-5010 (2006).

S. Beyer and F. C. Simmel, A DNA signal translator for the controlled release of a protein by an aptamer, Nucleic Acids Research 34, 1581-1587 (2006).

M. Olapinski, S. Manus, M. George, A. Brüggemann, N. Fertig, and F. C. Simmel, Detection of lipid bilayer and peptide pore formation at gigahertz frequencies, Applied Physics Letters 88, 013902 (2006).

2005

T. Liedl and F. C. Simmel, Switching the Conformation of a DNA Molecule with a Chemical Oscillator, Nano Letters 5,1894-1898 (2005).

T. Liedl, S. Keller, F. C. Simmel, J. O. Rädler and W. J. Parak, Fluorescent Nanocrystals as Colloidal Probes in Complex Fluids Measured by Fluorescence Correlation Spectroscopy , Small 1, 997-1003 (2005).

W. U. Dittmer, S. Kempter, J. O. Rädler and F. C. Simmel, Using gene regulation to program DNA-based molecular devices, Small 1, 709-712 (2005).

S. Beyer, P. Nickels and F. C. Simmel, Periodic DNA nanotemplates synthesized by rolling circle amplification, Nano Letters 5, 719-722 (2005).

S. Beyer, W. U. Dittmer and F.C. Simmel , Design variations for an aptamer-based DNA nanodevice, Journal of Biomedical Nanotechnology 1, 96-101 (2005).

F. C. Simmel and W. U. Dittmer, DNA nanodevices, Small 1, 284-299 (2005).

2004

P. Nickels, W. U. Dittmer, S. Beyer, J. P. Kotthaus and F. C. Simmel, Polyaniline nanowire synthesis templated by DNA, Nanotechnology 15, 1524-1529 (2004).

W. U. Dittmer and F. C. Simmel, Chains of semiconductor nanoparticles templated on DNA, Applied Physics Letters 85, 633-635 (2004).

W. U. Dittmer, A. Reuter und F. C. Simmel, A DNA-based machine that can cyclically bind and release thrombin, Angewandte Chemie Int. Ed. 43, 3550-3553 (2004).

W. U. Dittmer and F. C. Simmel, Transcriptional Control of DNA-based Nanomachines, Nano Letters 4, 689-691 (2004).